If you’d like to give it a try, I’ve posted all the source to sourceforge. So here is what worked for me:ġ1: INCLUDEPATH += /Library/Frameworks/amework/Versions/2.6.1/include/mono-1.0 /sw/include/glib-2.0 /sw/lib/glib-2.0/includeġ2: LIBS += -L/Library/Frameworks/amework/Versions/2.6.1/lib -L/sw/lib -pthread -lmono -lpthread -lm -lgthread-2.0 -lglib-2.0 -lintlġ7: INCLUDEPATH += /usr/include/mono-1.0 /usr/include/glib-2.0 /usr/lib/glib-2.0/includeġ8: LIBS += -Wl,- export-dynamic -pthread -lmono -ldl -lpthread -lm -lgthread-2.0 -lrt -lglib-2.0Ģ2: INCLUDEPATH += "C:\Program Files (x86)\Mono-2.6\include\glib-2.0" "C:\Program Files (x86)\Mono-2.6\lib\glib-2.0\include" "C:\Program Files (x86)\Mono-2.6\include\mono-1.0" Since I have Qt installed on all my systems, I used a qmake project, to generate the make files (or Xcode projects as the case may be). At the end the problem turned out to be that Snow Leopard liked the executable to be 64bit by default, but the glib libraries were only available for 32bit and ppc. After all one draws several dependencies when embedding mono, the most troublesome for me proved to be glib2 and OS X. However I did struggle a bit with getting it compiled. First we get a hold of the RoadRunner module, or in this case an instance of the RoadRunner class:ħ: void PrintResult( double** data, int numRows, int numCols)ġ6: << setw(7) << setprecision(2) << setfill( ' ')Ģ8: instance.LoadSBMLFromFile( "BorisEJB.xml") ģ5: double** result = instance.Simulate(&numRows,&numCols) ģ7: PrintResult(result, numRows, numCols) Īnd the advantage? It runs like a charm on Linux and OS X. The idea is basically the same as when using any SBW Module. This enables the C++ application to directly reference RoadRunner. So what about MONO Embedding? Or in other words, writing a C++ application, that would embed the MONO Runtime. The only drawback would be that this will not work on Linux or OS X. Miguez (femiguez at iastate.1: // RoadRunnerCLI.cpp : main project file.Ĩ: static void PrintResult(cli::array^ data)ġ0: for ( int i = 0 i GetLength(0) i++)ġ2: for ( int j = 0 j GetLength(1) j++)Ģ7: (L "C:\\Users\\fbergmann\\Documents\\SBML Models\\BorisEJB.xml") Ģ8: tTimeStart(0.0) Ģ9: tTimeEnd(100.0) ģ2: cli::array^ result = roadRunnerInstance.simulate() If you have any questions contact Fernando E. If you do build the vignettes, there is an introduction to the packageĪnd a document which might help you build your own scripts either in R Still, if you want to build the vignettes, then use this insteadĭevtools::install_github("femiguez/apsimx", build_vignettes = TRUE,īuild_opts = c("-no-resave-data", "-no-manual")) Have recently eliminated the APSIM-X dependency. Note: Building the vignettes does not require the presence of APSIM-X as I It is not necessary to build the vignettes as they are also at: Remotes::install_github("femiguez/apsimx")
MONO FRAMEWORK DOWNLOAD INSTALL
If you want to install this package from github try in R:ĭevtools::install_github("femiguez/apsimx")
MONO FRAMEWORK DOWNLOAD UPDATE
Required for Windows and I have had to update the Mono framework toĦ.12 on Mac (again this applies to pre Sep 2021).
Since APSIM Next Gen 2021.04.01 (at least). If you are running the latest version of APSIM Next Gen (Sept 2021 or later), you do Mono should be installed first (in Mac and Linux). The installer also updated GTK3 to 3.24.20 during the installation.įor older versions of APSIM Next Gen (before Sept 2021) the mono framework was required to run on Mac and Linux (Debian). The dotnet runtime environment is shipped with the image/package.įor current versions (Nov 2021), on Windows, the 'Microsoft Windows Desktop Runtime' 3.1.14 is required.
MONO FRAMEWORK DOWNLOAD SOFTWARE
GSODR, listviewer, maps, mvtnorm, nasapower, nloptr, reactR, rmarkdown, soilDB, sp, spData, sf, ucminfĬurrent (Nov 2021) versions of APSIM Next Gen do not require additional software Suggested R packages: BayesianTools, datasets, daymetr, FedData, ggplot2,
Imported R packages: DBI, jsonlite, knitr, RSQLite, tools, utils, xml2 It can inspect, edit, run and readĪPSIM files in both platforms. This package allows for interaction with APSIM-X ("Next Generation")Īnd/or APSIM 'Classic' (7.10). Apsimx: R package for APSIM-X (NextGen) and APSIM Classic (7.x)
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